Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron (metal) dependent repressor, dtxr family | SAMN04487898_102177 | Not Available | Positive | 802681 - 803343 | 25089.4 |
| hypothetical protein | SAMN04487898_102178 | Not Available | Positive | 803389 - 804675 | 50146.1 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04487898_102179 | Not Available | Negative | 804727 - 805479 | 26063.2 |
| hypothetical protein | SAMN04487898_102180 | Not Available | Positive | 805554 - 805958 | 15527.2 |
| 23s rrna m(6)a-1618 methyltransferase | SAMN04487898_102181 | Not Available | Negative | 805955 - 806950 | 36642.0 |
| diacylglycerol kinase (atp) | SAMN04487898_102182 | Not Available | Positive | 806995 - 807354 | 12812.2 |
| dna replication and repair protein reco | SAMN04487898_102183 | Not Available | Positive | 807344 - 808069 | 28123.2 |
| Trna-val | Not Available | Not Available | Positive | 808198 - 808275 | Not Available |
| Trna-val | Not Available | Not Available | Positive | 808320 - 808397 | Not Available |
| organic hydroperoxide reductase osmc/ohra | SAMN04487898_102186 | Not Available | Negative | 808533 - 809009 | 17733.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

