Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04487898_102157 | Not Available | Negative | 779412 - 780266 | 31527.1 |
| cysteinyl-trna synthetase | SAMN04487898_102158 | Not Available | Negative | 780349 - 781809 | 54833.4 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN04487898_102159 | Not Available | Negative | 781828 - 782937 | 42087.2 |
| membrane associated serine protease, rhomboid family | SAMN04487898_102160 | Not Available | Negative | 782937 - 783803 | 32345.9 |
| rhomboid-like protein | SAMN04487898_102161 | Not Available | Negative | 783796 - 784533 | 27571.0 |
| dna mismatch repair protein mutl | SAMN04487898_102162 | Not Available | Negative | 784538 - 786409 | 69521.9 |
| cubico group peptidase, beta-lactamase class c family | SAMN04487898_102163 | Not Available | Positive | 786554 - 788347 | 66501.5 |
| phage repressor protein c, contains cro/c1-type hth and peptisase s24 domains | SAMN04487898_102164 | Not Available | Negative | 788395 - 789081 | 25878.9 |
| hypothetical protein | SAMN04487898_102165 | Not Available | Positive | 789206 - 790342 | 44506.2 |
| isopenicillin n synthase | SAMN04487898_102166 | Not Available | Negative | 790505 - 791467 | 36246.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

