Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyltransferase domain-containing protein | SAMN04487898_102127 | Not Available | Negative | 745426 - 746271 | 32223.8 |
| protein of unknown function | SAMN04487898_102128 | Not Available | Negative | 746298 - 747257 | 35272.4 |
| substrate import-associated zinc metallohydrolase lipoprotein | SAMN04487898_102129 | Not Available | Negative | 747282 - 748172 | 33794.6 |
| susd family protein | SAMN04487898_102130 | Not Available | Negative | 748185 - 749642 | 54847.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_102131 | Not Available | Negative | 749654 - 753301 | 134948.0 |
| fecr family protein | SAMN04487898_102132 | Not Available | Negative | 753456 - 754658 | 44671.7 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_102133 | Not Available | Negative | 754723 - 755313 | 22410.2 |
| 6,7-dimethyl-8-ribityllumazine synthase | SAMN04487898_102134 | Not Available | Positive | 755518 - 756009 | 17250.7 |
| hypothetical protein | SAMN04487898_102135 | Not Available | Positive | 756078 - 756200 | 4445.62 |
| bacillithiol system protein ytxj | SAMN04487898_102136 | Not Available | Positive | 756228 - 756560 | 12657.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

