Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exodeoxyribonuclease-3 | SAMN04487898_13118 | Not Available | Negative | 6732872 - 6733714 | 32384.3 |
| starch-binding associating with outer membrane | SAMN04487898_13119 | Not Available | Negative | 6733733 - 6735244 | 56577.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_13120 | Not Available | Negative | 6735269 - 6738667 | 126601.0 |
| fecr family protein | SAMN04487898_13121 | Not Available | Negative | 6738732 - 6739703 | 37006.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_13122 | Not Available | Negative | 6739816 - 6740397 | 22503.2 |
| pap2 superfamily c-terminal | SAMN04487898_13123 | Not Available | Positive | 6740714 - 6741334 | 23488.6 |
| two component transcriptional regulator, lyttr family | SAMN04487898_13124 | Not Available | Positive | 6741826 - 6742572 | 28248.5 |
| histidine kinase | SAMN04487898_13125 | Not Available | Positive | 6742646 - 6743734 | 42179.4 |
| protein of unknown function | SAMN04487898_13126 | Not Available | Negative | 6744089 - 6746647 | 94914.4 |
| thioredoxin-like | SAMN04487898_13127 | Not Available | Negative | 6746760 - 6747212 | 17088.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

