Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_12931 | Not Available | Negative | 6632039 - 6635236 | 118079.0 |
| hypothetical protein | SAMN04487898_12932 | Not Available | Positive | 6635349 - 6635564 | 8512.71 |
| hypothetical protein | SAMN04487898_12933 | Not Available | Negative | 6635610 - 6635852 | 9029.63 |
| glycerophosphoryl diester phosphodiesterase | SAMN04487898_12934 | Not Available | Negative | 6635856 - 6636689 | 31369.0 |
| calcineurin-like phosphoesterase | SAMN04487898_12935 | Not Available | Negative | 6636701 - 6637984 | 48373.3 |
| starch-binding associating with outer membrane | SAMN04487898_12936 | Not Available | Negative | 6638006 - 6639478 | 55087.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_12937 | Not Available | Negative | 6639491 - 6642964 | 127830.0 |
| fecr family protein | SAMN04487898_12938 | Not Available | Negative | 6643041 - 6644060 | 38397.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_12939 | Not Available | Negative | 6644152 - 6644754 | 24038.0 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04487898_12940 | Not Available | Positive | 6644763 - 6645458 | 26960.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

