Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein ybjq, upf0145 family | SAMN04487898_12855 | Not Available | Positive | 6599242 - 6599562 | 11076.5 |
| transposase domain | SAMN04487898_12856 | Not Available | Positive | 6599633 - 6599894 | 9868.01 |
| hypothetical protein | SAMN04487898_1291 | Not Available | Negative | 6599895 - 6600041 | 5431.44 |
| hypothetical protein | SAMN04487898_1294 | Not Available | Negative | 6600650 - 6600871 | 8261.45 |
| n6-l-threonylcarbamoyladenine synthase | SAMN04487898_1295 | Not Available | Negative | 6600887 - 6601888 | 36045.7 |
| family of unknown function | SAMN04487898_1296 | Not Available | Positive | 6602006 - 6606412 | 164177.0 |
| 3,4-dihydroxy-2-butanone 4-phosphate synthase | SAMN04487898_1297 | Not Available | Negative | 6606417 - 6607628 | 44137.2 |
| lipopolysaccharide export system permease protein | SAMN04487898_1298 | Not Available | Negative | 6607775 - 6609130 | 50624.1 |
| hypothetical protein | SAMN04487898_1299 | Not Available | Negative | 6609245 - 6609625 | 14914.5 |
| Trna-met | Not Available | Not Available | Positive | 6610422 - 6610495 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

