Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane receptor proteins, mostly fe transport | SAMN04487898_12622 | Not Available | Positive | 6410951 - 6413395 | 88775.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_12623 | Not Available | Positive | 6413464 - 6414084 | 23874.1 |
| fecr family protein | SAMN04487898_12624 | Not Available | Positive | 6414153 - 6415349 | 44241.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_12625 | Not Available | Positive | 6415600 - 6419160 | 131899.0 |
| susd family protein | SAMN04487898_12626 | Not Available | Positive | 6419171 - 6420616 | 54018.1 |
| substrate import-associated zinc metallohydrolase lipoprotein | SAMN04487898_12627 | Not Available | Positive | 6420636 - 6421946 | 47756.6 |
| protein of unknown function | SAMN04487898_12628 | Not Available | Positive | 6421954 - 6423273 | 47350.5 |
| peptide/nickel transport system substrate-binding protein | SAMN04487898_12629 | Not Available | Negative | 6423514 - 6425145 | 62424.2 |
| iron complex transport system substrate-binding protein | SAMN04487898_12630 | Not Available | Positive | 6425191 - 6425649 | 17320.9 |
| nad(p)h-dependent fmn reductase | SAMN04487898_12631 | Not Available | Negative | 6425636 - 6426157 | 19388.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

