Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polygalacturonase | SAMN04487898_1248 | Not Available | Negative | 6212409 - 6213812 | 51921.0 |
| pectate lyase, pela/pel-15e family | SAMN04487898_1249 | Not Available | Negative | 6213838 - 6214875 | 39282.6 |
| pectinesterase | SAMN04487898_12410 | Not Available | Negative | 6214903 - 6215925 | 37547.0 |
| beta-xylosidase | SAMN04487898_12411 | Not Available | Negative | 6215936 - 6217591 | 61310.6 |
| lysophospholipase l1 | SAMN04487898_12412 | Not Available | Negative | 6217646 - 6218398 | 28457.4 |
| acetyl esterase/lipase | SAMN04487898_12413 | Not Available | Negative | 6218511 - 6219437 | 33710.7 |
| polygalacturonase | SAMN04487898_12414 | Not Available | Negative | 6219437 - 6221083 | 60934.3 |
| pectate lyase | SAMN04487898_12415 | Not Available | Negative | 6221139 - 6222644 | 54942.5 |
| pectinesterase | SAMN04487898_12416 | Not Available | Negative | 6222629 - 6223639 | 36907.6 |
| hypothetical protein | SAMN04487898_12417 | Not Available | Negative | 6223648 - 6225126 | 53377.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

