Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dinb superfamily protein | SAMN04487898_12386 | Not Available | Negative | 6197665 - 6198210 | 20952.8 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04487898_12387 | Not Available | Negative | 6198275 - 6198814 | 20879.0 |
| helix-turn-helix | SAMN04487898_12388 | Not Available | Positive | 6198980 - 6199300 | 12678.7 |
| conserved repeat domain-containing protein | SAMN04487898_12389 | Not Available | Positive | 6199978 - 6202515 | 89084.4 |
| glucuronate isomerase | SAMN04487898_1242 | Not Available | Negative | 6203545 - 6204945 | 53590.2 |
| altronate hydrolase | SAMN04487898_1243 | Not Available | Negative | 6204998 - 6206650 | 59181.5 |
| tagaturonate reductase | SAMN04487898_1244 | Not Available | Negative | 6206650 - 6208167 | 55721.9 |
| polygalacturonase | SAMN04487898_1245 | Not Available | Negative | 6208302 - 6209990 | 61735.4 |
| pectinesterase | SAMN04487898_1246 | Not Available | Negative | 6210251 - 6211375 | 41921.3 |
| transcriptional regulator, laci family | SAMN04487898_1247 | Not Available | Positive | 6211390 - 6212403 | 37914.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

