Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhamnogalacturonyl hydrolase yesr | SAMN04487898_12233 | Not Available | Negative | 6012731 - 6014092 | 51064.3 |
| pkd domain-containing protein | SAMN04487898_12234 | Not Available | Negative | 6014174 - 6015250 | 41469.7 |
| hypothetical protein | SAMN04487898_12235 | Not Available | Negative | 6015254 - 6015781 | 19779.4 |
| polygalacturonase | SAMN04487898_12236 | Not Available | Negative | 6015813 - 6017393 | 57172.5 |
| lysophospholipase l1 | SAMN04487898_12237 | Not Available | Negative | 6017414 - 6018745 | 50186.4 |
| alpha-l-fucosidase 2 | SAMN04487898_12238 | Not Available | Negative | 6018752 - 6021094 | 87052.6 |
| starch-binding associating with outer membrane | SAMN04487898_12239 | Not Available | Negative | 6021097 - 6022602 | 56494.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_12240 | Not Available | Negative | 6022621 - 6025698 | 112521.0 |
| helix-turn-helix domain-containing protein | SAMN04487898_12241 | Not Available | Positive | 6025999 - 6026877 | 34171.8 |
| mfs transporter, fhs family, l-fucose permease | SAMN04487898_12242 | Not Available | Positive | 6026931 - 6028193 | 45571.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

