Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| triosephosphate isomerase | SAMN04487898_12196 | Not Available | Positive | 5936344 - 5937105 | 27555.8 |
| ribosomal protein l11 methyltransferase | SAMN04487898_12197 | Not Available | Positive | 5937105 - 5937944 | 31588.4 |
| udp-n-acetylmuramate: l-alanyl-gamma-d-glutamyl-meso-diaminopimelate ligase | SAMN04487898_12198 | Not Available | Positive | 5937963 - 5939330 | 51080.5 |
| helix-turn-helix domain-containing protein | SAMN04487898_12199 | Not Available | Positive | 5939360 - 5939689 | 12582.3 |
| hypothetical protein | SAMN04487898_121100 | Not Available | Negative | 5939692 - 5940810 | 43581.0 |
| hypothetical protein | SAMN04487898_121101 | Not Available | Negative | 5940882 - 5941076 | 7416.9 |
| sensor histidine kinase, lyts/yehu family | SAMN04487898_121102 | Not Available | Negative | 5941478 - 5944408 | 112401.0 |
| two component transcriptional regulator, lyttr family | SAMN04487898_121103 | Not Available | Negative | 5944419 - 5945198 | 29314.1 |
| ferritin-like domain-containing protein | SAMN04487898_121104 | Not Available | Positive | 5945396 - 5946124 | 26218.2 |
| ferritin-like domain-containing protein | SAMN04487898_121105 | Not Available | Positive | 5946142 - 5946993 | 30254.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

