Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_12075 | Not Available | Positive | 5785583 - 5788930 | 121365.0 |
| susd family protein | SAMN04487898_12076 | Not Available | Positive | 5788951 - 5790342 | 50918.7 |
| thiol-disulfide isomerase or thioredoxin | SAMN04487898_12077 | Not Available | Positive | 5790415 - 5791437 | 38464.8 |
| thiol-disulfide isomerase or thioredoxin | SAMN04487898_12078 | Not Available | Positive | 5791449 - 5792873 | 52588.3 |
| rhamnogalacturonyl hydrolase yesr | SAMN04487898_12079 | Not Available | Positive | 5793037 - 5794158 | 43347.6 |
| hypothetical protein | SAMN04487898_12080 | Not Available | Positive | 5794166 - 5795413 | 47609.5 |
| signal transduction histidine kinase | SAMN04487898_12081 | Not Available | Negative | 5795448 - 5799482 | 153475.0 |
| nhl repeat-containing protein | SAMN04487898_12082 | Not Available | Positive | 5799674 - 5800999 | 47963.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_12083 | Not Available | Positive | 5801059 - 5804154 | 114300.0 |
| starch-binding associating with outer membrane | SAMN04487898_12084 | Not Available | Positive | 5804169 - 5806157 | 74512.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

