Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pas domain s-box-containing protein | SAMN04487898_12055 | Not Available | Negative | 5762795 - 5763922 | 42388.1 |
| hypothetical protein | SAMN04487898_12056 | Not Available | Negative | 5764016 - 5764846 | 32562.8 |
| 1-aminocyclopropane-1-carboxylate deaminase | SAMN04487898_12057 | Not Available | Negative | 5764847 - 5765734 | 32262.0 |
| hypothetical protein | SAMN04487898_12058 | Not Available | Negative | 5765766 - 5765930 | 6690.34 |
| 23s rrna pseudouridine1911/1915/1917 synthase | SAMN04487898_12059 | Not Available | Positive | 5766086 - 5767117 | 39278.0 |
| branched-chain amino acid aminotransferase | SAMN04487898_12060 | Not Available | Positive | 5767135 - 5767971 | 31499.3 |
| lrp/asnc family transcriptional regulator, regulator for asna, asnc and gida | SAMN04487898_12061 | Not Available | Negative | 5767995 - 5768447 | 17006.8 |
| ornithine--oxo-acid transaminase | SAMN04487898_12062 | Not Available | Positive | 5768628 - 5769854 | 44582.4 |
| arginase | SAMN04487898_12063 | Not Available | Positive | 5769861 - 5770811 | 35166.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_12064 | Not Available | Positive | 5770877 - 5771473 | 23174.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

