Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione peroxidase | SAMN04487898_12045 | Not Available | Positive | 5752392 - 5752874 | 18465.3 |
| bacillithiol biosynthesis deacetylase bshb1 | SAMN04487898_12046 | Not Available | Positive | 5752882 - 5753598 | 26641.8 |
| glutaryl-coa dehydrogenase | SAMN04487898_12047 | Not Available | Positive | 5753667 - 5755028 | 50450.1 |
| hypothetical protein | SAMN04487898_12048 | Not Available | Negative | 5755033 - 5755437 | 15046.2 |
| l-lysine 6-transaminase | SAMN04487898_12049 | Not Available | Negative | 5755437 - 5756768 | 49667.5 |
| alginate lyase | SAMN04487898_12050 | Not Available | Negative | 5756951 - 5758039 | 40660.6 |
| regulator of protease activity hflc, stomatin/prohibitin superfamily | SAMN04487898_12051 | Not Available | Positive | 5758224 - 5759126 | 33584.6 |
| transketolase | SAMN04487898_12052 | Not Available | Positive | 5759116 - 5761125 | 74250.5 |
| putative hydrolase of the had superfamily | SAMN04487898_12053 | Not Available | Positive | 5761113 - 5761724 | 23493.4 |
| fructose-bisphosphate aldolase, class i | SAMN04487898_12054 | Not Available | Positive | 5761740 - 5762768 | 37812.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

