Pedobacter sp. ok626

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. OK626 is a bacterial strain notable for its flagella presence, which suggests motility capabilities. This characteristic is significant as it may influence the bacterium's ability to navigate various environments, potentially aiding in nutrient acquisition or colonization of specific niches. The strain possesses a single replicon, indicating a streamlined genomic organization that could be advantageous for replication efficiency and resource allocation. This trait often reflects adaptation to specific ecological niches, where maintaining a compact genome may facilitate survival under selective pressures. The genomic data for Pedobacter sp. OK626 is documented under the accession number FNEX00000000.1, providing a reference for research and further study. This genetic information can be crucial for understanding the strain's metabolic pathways, ecological interactions, and potential applications in biotechnology or environmental microbiology. In summary, the presence of flagella and a singular replicon in Pedobacter sp. OK626 suggests adaptations that may enhance its survivability in dynamic environments. These traits could enable the bacterium to thrive in varied habitats, contributing to its ecological roles, such as in nutrient cycling or biodegradation processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. ok626
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. ok626 genome assembly, contig: Ga0066764_135, whole

Gene Summary

Adenine Count

2049762 bp

Thymine Count

2048164 bp

Guanine Count

1337759 bp

Cytosine Count

1326840 bp

Genome Length

6763971 bp

Protein-coding Genes

5456 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
barrel-sandwich domain of cusb or hlyd membrane-fusionSAMN04487898_101418Not AvailablePositive592583 - 59350933414.6
heavy metal efflux pump, czca familySAMN04487898_101419Not AvailablePositive593506 - 596544111154.0
transporter family proteinSAMN04487898_101420Not AvailableNegative596531 - 59694714903.9
dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domainSAMN04487898_101421Not AvailablePositive597004 - 59768125438.0
signal transduction histidine kinaseSAMN04487898_101422Not AvailablePositive597678 - 59893147638.2
competence protein comecSAMN04487898_101423Not AvailableNegative598917 - 60076470360.2
type ii secretion system (t2ss), protein kSAMN04487898_101424Not AvailableNegative600764 - 60278576554.7
dna-binding transcriptional regulator, merr familySAMN04487898_101425Not AvailableNegative602855 - 60319013073.9
alanyl-trna synthetaseSAMN04487898_101426Not AvailablePositive603332 - 606031101669.0
hypothetical proteinSAMN04487898_101427Not AvailableNegative606114 - 6063569474.66

Displaying genes 451 – 460 of 5532 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.