Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| barrel-sandwich domain of cusb or hlyd membrane-fusion | SAMN04487898_101418 | Not Available | Positive | 592583 - 593509 | 33414.6 |
| heavy metal efflux pump, czca family | SAMN04487898_101419 | Not Available | Positive | 593506 - 596544 | 111154.0 |
| transporter family protein | SAMN04487898_101420 | Not Available | Negative | 596531 - 596947 | 14903.9 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04487898_101421 | Not Available | Positive | 597004 - 597681 | 25438.0 |
| signal transduction histidine kinase | SAMN04487898_101422 | Not Available | Positive | 597678 - 598931 | 47638.2 |
| competence protein comec | SAMN04487898_101423 | Not Available | Negative | 598917 - 600764 | 70360.2 |
| type ii secretion system (t2ss), protein k | SAMN04487898_101424 | Not Available | Negative | 600764 - 602785 | 76554.7 |
| dna-binding transcriptional regulator, merr family | SAMN04487898_101425 | Not Available | Negative | 602855 - 603190 | 13073.9 |
| alanyl-trna synthetase | SAMN04487898_101426 | Not Available | Positive | 603332 - 606031 | 101669.0 |
| hypothetical protein | SAMN04487898_101427 | Not Available | Negative | 606114 - 606356 | 9474.66 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

