Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhamnogalacturonyl hydrolase yesr | SAMN04487898_11897 | Not Available | Negative | 5516253 - 5517386 | 43203.1 |
| glycosyl hydrolases family 2 | SAMN04487898_11898 | Not Available | Negative | 5517413 - 5520328 | 110464.0 |
| lysophospholipase l1 | SAMN04487898_11899 | Not Available | Negative | 5520429 - 5521898 | 53970.8 |
| rhamnogalacturonan endolyase | SAMN04487898_118100 | Not Available | Negative | 5521902 - 5523761 | 68765.8 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_118101 | Not Available | Positive | 5524091 - 5524684 | 22958.6 |
| fecr family protein | SAMN04487898_118102 | Not Available | Positive | 5524815 - 5525810 | 38190.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_118103 | Not Available | Positive | 5526011 - 5529520 | 127136.0 |
| starch-binding associating with outer membrane | SAMN04487898_118104 | Not Available | Positive | 5529542 - 5531080 | 57429.4 |
| arylsulfatase | SAMN04487898_118105 | Not Available | Negative | 5531149 - 5532759 | 60882.5 |
| hypothetical protein | SAMN04487898_118106 | Not Available | Negative | 5532768 - 5535170 | 87939.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

