Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_117159 | Not Available | Negative | 5374184 - 5374738 | 21530.6 |
| ribosomal protein s18 acetylase rimi | SAMN04487898_117160 | Not Available | Positive | 5374884 - 5375420 | 20561.7 |
| acetyltransferase (gnat) domain-containing protein | SAMN04487898_117161 | Not Available | Negative | 5375417 - 5376490 | 41006.8 |
| transposase domain | SAMN04487898_117162 | Not Available | Positive | 5376632 - 5376912 | 10639.0 |
| collagen triple helix repeat-containing protein | SAMN04487898_1181 | Not Available | Negative | 5376913 - 5378771 | 61747.9 |
| gliding motility-associated c-terminal domain-containing protein | SAMN04487898_1182 | Not Available | Negative | 5378785 - 5379291 | 18948.7 |
| type ix secretion system membrane protein, porp/sprf family | SAMN04487898_1183 | Not Available | Negative | 5379621 - 5380508 | 32339.6 |
| gliding motility-associated c-terminal domain-containing protein | SAMN04487898_1184 | Not Available | Negative | 5380529 - 5386969 | 220392.0 |
| helix-turn-helix domain-containing protein | SAMN04487898_1185 | Not Available | Negative | 5387105 - 5388190 | 42377.2 |
| alkylated dna repair dioxygenase alkb | SAMN04487898_1186 | Not Available | Positive | 5388422 - 5389030 | 23322.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

