Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heparin/heparan-sulfate lyase | SAMN04487898_117139 | Not Available | Positive | 5346828 - 5349146 | 87861.4 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04487898_117140 | Not Available | Negative | 5349239 - 5349988 | 26005.4 |
| hypothetical protein | SAMN04487898_117141 | Not Available | Negative | 5350016 - 5350714 | 24797.2 |
| hypothetical protein | SAMN04487898_117142 | Not Available | Negative | 5350727 - 5351377 | 24707.7 |
| tonb-dependent receptor plug domain | SAMN04487898_117143 | Not Available | Negative | 5351392 - 5353671 | 85902.7 |
| winged helix dna-binding domain-containing protein | SAMN04487898_117144 | Not Available | Negative | 5353668 - 5353952 | 10875.5 |
| hypothetical protein | SAMN04487898_117145 | Not Available | Negative | 5353962 - 5354675 | 27304.3 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_117146 | Not Available | Positive | 5354801 - 5355400 | 23126.9 |
| fecr family protein | SAMN04487898_117147 | Not Available | Positive | 5355468 - 5356646 | 43924.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_117148 | Not Available | Positive | 5356783 - 5360241 | 127753.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

