Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04487898_11718 | Not Available | Positive | 5200096 - 5200848 | 27244.0 |
| hypothetical protein | SAMN04487898_11719 | Not Available | Positive | 5200944 - 5201579 | 24319.9 |
| methionine synthase (b12-dependent) | SAMN04487898_11721 | Not Available | Positive | 5201993 - 5205652 | 135311.0 |
| 5,10-methylenetetrahydrofolate reductase (nad(p)) | SAMN04487898_11722 | Not Available | Positive | 5205696 - 5206652 | 35853.4 |
| heat shock protein hslj | SAMN04487898_11723 | Not Available | Positive | 5206795 - 5207229 | 15740.3 |
| threonine synthase | SAMN04487898_11724 | Not Available | Negative | 5207216 - 5208526 | 48663.0 |
| homoserine kinase | SAMN04487898_11725 | Not Available | Negative | 5208562 - 5209497 | 33527.6 |
| aspartate kinase | SAMN04487898_11726 | Not Available | Negative | 5209504 - 5211951 | 89552.6 |
| ribosome biogenesis gtpase | SAMN04487898_11727 | Not Available | Positive | 5212239 - 5213189 | 35499.4 |
| d-tyrosyl-trna(tyr) deacylase | SAMN04487898_11728 | Not Available | Positive | 5213193 - 5213645 | 16246.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

