Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| periplasmic chaperone for outer membrane proteins skp | SAMN04487898_116167 | Not Available | Negative | 5170397 - 5170984 | 21628.5 |
| dna gyrase subunit b | SAMN04487898_116168 | Not Available | Positive | 5171240 - 5173198 | 72532.6 |
| aspartyl protease | SAMN04487898_116169 | Not Available | Negative | 5173256 - 5173681 | 15758.3 |
| malate dehydrogenase (nad) | SAMN04487898_116170 | Not Available | Negative | 5173686 - 5174624 | 33092.2 |
| apolipoprotein d and lipocalin family protein | SAMN04487898_116171 | Not Available | Positive | 5174769 - 5175254 | 19007.8 |
| dna polymerase-3 subunit alpha | SAMN04487898_116172 | Not Available | Positive | 5175343 - 5179773 | 167147.0 |
| thioredoxin | SAMN04487898_116173 | Not Available | Positive | 5179907 - 5180224 | 11632.1 |
| protein of unknown function duf58 | SAMN04487898_116174 | Not Available | Positive | 5180291 - 5181211 | 35652.0 |
| acetylornithine/succinyldiaminopimelate/ putresci ne aminotransferase | SAMN04487898_116175 | Not Available | Negative | 5181214 - 5182401 | 43085.6 |
| hypothetical protein | SAMN04487898_116176 | Not Available | Negative | 5182418 - 5182870 | 18012.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

