Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane fusion protein, cobalt-zinc-cadmium efflux system | SAMN04487898_101378 | Not Available | Negative | 546046 - 547143 | 40380.4 |
| outer membrane protein, cobalt-zinc-cadmium efflux system | SAMN04487898_101379 | Not Available | Negative | 547152 - 548408 | 48043.2 |
| signal transduction histidine kinase | SAMN04487898_101380 | Not Available | Negative | 548510 - 549868 | 51412.5 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04487898_101381 | Not Available | Negative | 549874 - 550554 | 25911.5 |
| inosose dehydratase | SAMN04487898_101382 | Not Available | Negative | 550615 - 551520 | 33009.9 |
| hypothetical protein | SAMN04487898_101383 | Not Available | Negative | 551656 - 552003 | 12334.6 |
| dnaj domain-containing protein | SAMN04487898_101384 | Not Available | Positive | 552127 - 552573 | 16870.1 |
| uncharacterized lipoprotein yddw, upf0748 family | SAMN04487898_101385 | Not Available | Positive | 552661 - 554202 | 58462.6 |
| acetyltransferase (gnat) family protein | SAMN04487898_101386 | Not Available | Positive | 554250 - 554699 | 16863.4 |
| dna polymerase-4 | SAMN04487898_101387 | Not Available | Positive | 554792 - 555949 | 43217.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

