Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinyl-coa synthetase alpha subunit | SAMN04487898_11627 | Not Available | Positive | 5014948 - 5015820 | 29759.3 |
| peptide-methionine (r)-s-oxide reductase | SAMN04487898_11628 | Not Available | Positive | 5016014 - 5016466 | 16929.2 |
| rare lipoprotein a | SAMN04487898_11629 | Not Available | Positive | 5016546 - 5017007 | 16732.0 |
| ribonucleoside-diphosphate reductase beta chain | SAMN04487898_11630 | Not Available | Positive | 5017392 - 5018366 | 37460.7 |
| ribonucleoside-diphosphate reductase alpha chain | SAMN04487898_11631 | Not Available | Positive | 5018471 - 5020849 | 89078.3 |
| n-carbamoylputrescine amidase | SAMN04487898_11632 | Not Available | Positive | 5021281 - 5022156 | 32934.0 |
| agmatine deiminase | SAMN04487898_11633 | Not Available | Positive | 5022166 - 5023272 | 41806.1 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | SAMN04487898_11634 | Not Available | Positive | 5023278 - 5024021 | 26282.7 |
| l,d-transpeptidase catalytic domain | SAMN04487898_11635 | Not Available | Negative | 5024074 - 5024808 | 28142.1 |
| hypothetical protein | SAMN04487898_11636 | Not Available | Positive | 5024892 - 5026979 | 77563.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

