Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_101368 | Not Available | Positive | 532211 - 533053 | 31744.6 |
| alkylhydroperoxidase ahpd family core domain-containing protein | SAMN04487898_101369 | Not Available | Positive | 533120 - 533572 | 17082.6 |
| pas domain s-box-containing protein | SAMN04487898_101370 | Not Available | Positive | 533788 - 536598 | 105898.0 |
| dna-binding transcriptional regulator, lysr family | SAMN04487898_101371 | Not Available | Negative | 536603 - 537499 | 34637.1 |
| histidine ammonia-lyase | SAMN04487898_101372 | Not Available | Positive | 537576 - 539153 | 56719.8 |
| urocanate hydratase | SAMN04487898_101373 | Not Available | Positive | 539194 - 541194 | 73805.9 |
| hypothetical protein | SAMN04487898_101374 | Not Available | Negative | 541200 - 541898 | 25319.7 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN04487898_101375 | Not Available | Negative | 541980 - 542471 | 18700.1 |
| dna-binding transcriptional regulator, arsr family | SAMN04487898_101376 | Not Available | Negative | 542458 - 542799 | 13152.7 |
| cobalt-zinc-cadmium resistance protein czca | SAMN04487898_101377 | Not Available | Negative | 542885 - 546016 | 116377.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

