Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna methyltransferase, trmh family | SAMN04487898_11559 | Not Available | Positive | 4859435 - 4860220 | 29175.5 |
| Trna-cys | Not Available | Not Available | Positive | 4860270 - 4860343 | Not Available |
| hypothetical protein | SAMN04487898_11561 | Not Available | Positive | 4860377 - 4860550 | 6456.98 |
| dihydroorotate oxidase a | SAMN04487898_11562 | Not Available | Negative | 4860631 - 4861665 | 38245.3 |
| atp-binding cassette, subfamily f, member 3 | SAMN04487898_11563 | Not Available | Positive | 4861823 - 4863739 | 72220.9 |
| protein of unknown function | SAMN04487898_11564 | Not Available | Positive | 4863736 - 4865004 | 48932.1 |
| acyl-coa hydrolase | SAMN04487898_11565 | Not Available | Positive | 4865062 - 4865583 | 19257.3 |
| predicted rna-binding protein, contains pua-like domain | SAMN04487898_11566 | Not Available | Negative | 4865595 - 4865999 | 15494.5 |
| kef-type k+ transport system, membrane component kefb | SAMN04487898_11567 | Not Available | Negative | 4866068 - 4868236 | 79419.4 |
| hypothetical protein | SAMN04487898_11568 | Not Available | Negative | 4868253 - 4868816 | 21377.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

