Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent aldehyde dehydrogenase | SAMN04487898_114161 | Not Available | Positive | 4765276 - 4766853 | 55493.5 |
| altronate hydrolase | SAMN04487898_114162 | Not Available | Positive | 4766838 - 4768508 | 60632.8 |
| solute:na+ symporter, sss family | SAMN04487898_114163 | Not Available | Positive | 4768601 - 4770163 | 56906.8 |
| 4-hydroxy-tetrahydrodipicolinate synthase | SAMN04487898_114164 | Not Available | Positive | 4770452 - 4771390 | 34316.2 |
| repeat domain-containing protein | SAMN04487898_114165 | Not Available | Positive | 4771583 - 4773580 | 74041.2 |
| wd40-like beta propeller repeat | SAMN04487898_114166 | Not Available | Positive | 4773580 - 4774869 | 47160.1 |
| hypothetical protein | SAMN04487898_114167 | Not Available | Positive | 4774829 - 4775083 | 9587.26 |
| trna pseudouridine32 synthase / 23s rrna pseudouridine746 synthase | SAMN04487898_114168 | Not Available | Positive | 4775135 - 4775911 | 29112.8 |
| succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase | SAMN04487898_114169 | Not Available | Negative | 4775936 - 4777309 | 49708.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_114170 | Not Available | Negative | 4777328 - 4777930 | 23152.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

