Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | SAMN04487898_114110 | Not Available | Negative | 4708972 - 4709736 | 27607.6 |
| thiamine-phosphate pyrophosphorylase | SAMN04487898_114111 | Not Available | Negative | 4709739 - 4710359 | 23368.0 |
| hydroxymethylpyrimidine synthase | SAMN04487898_114112 | Not Available | Negative | 4710385 - 4712268 | 70252.7 |
| hypothetical protein | SAMN04487898_114113 | Not Available | Positive | 4712542 - 4712703 | 6295.84 |
| sugar phosphate permease | SAMN04487898_114115 | Not Available | Positive | 4713086 - 4714189 | 40356.5 |
| gas vesicle protein | SAMN04487898_114116 | Not Available | Negative | 4714253 - 4714642 | 14235.0 |
| mfs transporter, dha1 family, arabinose polymer transporter | SAMN04487898_114117 | Not Available | Positive | 4714909 - 4716069 | 40496.3 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_114118 | Not Available | Positive | 4716205 - 4716780 | 22366.1 |
| fecr family protein | SAMN04487898_114119 | Not Available | Positive | 4716899 - 4717912 | 37876.2 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_114120 | Not Available | Positive | 4718083 - 4721490 | 123805.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

