Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein ybjt, contains nad(p)-binding and duf2867 domains | SAMN04487898_11418 | Not Available | Negative | 4590910 - 4591560 | 24281.6 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b | SAMN04487898_11419 | Not Available | Positive | 4591733 - 4593196 | 54417.2 |
| peroxiredoxin | SAMN04487898_11420 | Not Available | Positive | 4593205 - 4594314 | 40955.1 |
| two-component system, ompr family, alkaline phosphatase synthesis response regulator phop | SAMN04487898_11421 | Not Available | Positive | 4594420 - 4595109 | 25992.8 |
| 23s rrna pseudouridine955/2504/2580 synthase | SAMN04487898_11422 | Not Available | Positive | 4595140 - 4595862 | 27544.3 |
| chloride channel protein, cic family | SAMN04487898_11423 | Not Available | Positive | 4595876 - 4597660 | 65344.1 |
| dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domains | SAMN04487898_11424 | Not Available | Negative | 4597704 - 4599110 | 52376.7 |
| hypothetical protein | SAMN04487898_11426 | Not Available | Positive | 4599791 - 4600093 | 10743.5 |
| hypothetical protein | SAMN04487898_11427 | Not Available | Negative | 4600175 - 4600369 | 7472.93 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_11428 | Not Available | Positive | 4600688 - 4601269 | 23107.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

