Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminodeoxyfutalosine synthase | SAMN04487898_113114 | Not Available | Positive | 4468926 - 4470119 | 46115.8 |
| probable phosphoglycerate mutase | SAMN04487898_113115 | Not Available | Positive | 4470121 - 4470732 | 22910.0 |
| chorismate dehydratase | SAMN04487898_113116 | Not Available | Positive | 4470742 - 4471467 | 26986.5 |
| dna mismatch repair protein muts | SAMN04487898_113117 | Not Available | Positive | 4471587 - 4474163 | 96785.6 |
| probable lipoprotein nlpc | SAMN04487898_113118 | Not Available | Positive | 4474165 - 4474686 | 18710.4 |
| hypothetical protein | SAMN04487898_113119 | Not Available | Positive | 4474689 - 4474811 | 4628.99 |
| protein of unknown function | SAMN04487898_113120 | Not Available | Negative | 4474797 - 4476713 | 72545.5 |
| transglutaminase-like superfamily protein | SAMN04487898_113121 | Not Available | Negative | 4476710 - 4478683 | 74878.0 |
| dna polymerase-3 subunit epsilon | SAMN04487898_113122 | Not Available | Positive | 4478847 - 4479830 | 37542.9 |
| epoxyqueuosine reductase | SAMN04487898_113123 | Not Available | Negative | 4479863 - 4480738 | 33481.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

