Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04487898_113103 | Not Available | Positive | 4456288 - 4459038 | 102756.0 |
| nicotinamide-nucleotide amidase | SAMN04487898_113104 | Not Available | Positive | 4459051 - 4460298 | 45560.1 |
| 2-oxoglutarate dehydrogenase e2 component (dihydrolipoamide succinyltransferase) | SAMN04487898_113105 | Not Available | Positive | 4460349 - 4461683 | 47903.8 |
| homoserine dehydrogenase | SAMN04487898_113106 | Not Available | Negative | 4461747 - 4462988 | 46529.7 |
| homoserine o-acetyltransferase | SAMN04487898_113107 | Not Available | Negative | 4462996 - 4464054 | 39235.7 |
| o-acetylhomoserine (thiol)-lyase | SAMN04487898_113108 | Not Available | Negative | 4464058 - 4465362 | 46789.2 |
| cystathionine gamma-synthase | SAMN04487898_113110 | Not Available | Negative | 4465861 - 4466982 | 40599.8 |
| lipocalin-like domain-containing protein | SAMN04487898_113111 | Not Available | Positive | 4467098 - 4467583 | 17527.0 |
| nipsnap protein | SAMN04487898_113112 | Not Available | Negative | 4467779 - 4468573 | 30719.6 |
| hypothetical protein | SAMN04487898_113113 | Not Available | Negative | 4468566 - 4468814 | 9605.71 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

