Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04487898_112175 | Not Available | Negative | 4303927 - 4305027 | 41784.0 |
| response regulator receiver domain-containing protein | SAMN04487898_112176 | Not Available | Positive | 4305067 - 4306809 | 68208.9 |
| trna threonylcarbamoyladenosine biosynthesis protein tsae | SAMN04487898_112177 | Not Available | Positive | 4307206 - 4307631 | 16062.2 |
| alanine dehydrogenase | SAMN04487898_112178 | Not Available | Positive | 4307693 - 4308919 | 44053.8 |
| d-alanyl-d-alanine dipeptidase | SAMN04487898_112179 | Not Available | Positive | 4308929 - 4309609 | 26396.4 |
| d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | SAMN04487898_112180 | Not Available | Negative | 4309626 - 4310978 | 51132.8 |
| pdz domain (also known as dhr or glgf) | SAMN04487898_112181 | Not Available | Positive | 4311058 - 4312260 | 44562.4 |
| hypothetical protein | SAMN04487898_112182 | Not Available | Positive | 4312308 - 4313246 | 35877.0 |
| cold shock protein (beta-ribbon, cspa family) | SAMN04487898_112183 | Not Available | Positive | 4313344 - 4313535 | 6960.28 |
| glycerophosphoryl diester phosphodiesterase | SAMN04487898_112184 | Not Available | Negative | 4313602 - 4314399 | 29717.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

