Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) | SAMN04487898_11255 | Not Available | Negative | 4175618 - 4178845 | 121462.0 |
| thioredoxin-like | SAMN04487898_11256 | Not Available | Positive | 4178973 - 4179482 | 18643.6 |
| trna a37 threonylcarbamoyladenosine dehydratase | SAMN04487898_11257 | Not Available | Negative | 4179494 - 4180270 | 28656.0 |
| tatd dnase family protein | SAMN04487898_11258 | Not Available | Negative | 4180272 - 4180928 | 24971.6 |
| beta-glucosidase | SAMN04487898_11259 | Not Available | Negative | 4180938 - 4182644 | 62862.7 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04487898_11260 | Not Available | Positive | 4182938 - 4183552 | 22036.5 |
| hypothetical protein | SAMN04487898_11261 | Not Available | Positive | 4183791 - 4183967 | 6584.43 |
| glycerol kinase | SAMN04487898_11262 | Not Available | Positive | 4184120 - 4185610 | 53920.3 |
| glycerol uptake facilitator protein | SAMN04487898_11263 | Not Available | Positive | 4185643 - 4186374 | 25285.3 |
| two component transcriptional regulator, lyttr family | SAMN04487898_11264 | Not Available | Negative | 4186382 - 4187077 | 26046.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

