Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shikimate kinase | SAMN04487898_111114 | Not Available | Positive | 4047000 - 4047482 | 17896.7 |
| uncharacterized membrane protein ypha, doxx/surf4 family | SAMN04487898_111115 | Not Available | Negative | 4047499 - 4047957 | 16894.2 |
| trna pseudouridine38-40 synthase | SAMN04487898_111116 | Not Available | Negative | 4048047 - 4048787 | 28493.3 |
| hexosaminidase | SAMN04487898_111117 | Not Available | Negative | 4048873 - 4050837 | 74146.0 |
| d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | SAMN04487898_111118 | Not Available | Negative | 4050889 - 4052301 | 50961.9 |
| aspartate-semialdehyde dehydrogenase | SAMN04487898_111119 | Not Available | Negative | 4052382 - 4053374 | 36190.9 |
| tat (twin-arginine translocation) pathway signal sequence | SAMN04487898_111120 | Not Available | Negative | 4053526 - 4054404 | 32754.1 |
| hydroxypyruvate isomerase | SAMN04487898_111121 | Not Available | Negative | 4054416 - 4055297 | 32653.4 |
| nucleoside transporter | SAMN04487898_111122 | Not Available | Negative | 4055312 - 4056538 | 45207.0 |
| protein of unknown function | SAMN04487898_111123 | Not Available | Negative | 4056571 - 4057266 | 25569.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

