Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted transcriptional regulator ydee, contains arac-type dna-binding domain | SAMN04487898_11194 | Not Available | Positive | 4022995 - 4023456 | 17286.3 |
| putative endopeptidase | SAMN04487898_11195 | Not Available | Positive | 4023502 - 4025547 | 76140.5 |
| cbs domain-containing protein | SAMN04487898_11196 | Not Available | Negative | 4025628 - 4026056 | 15967.5 |
| gh3 auxin-responsive promoter | SAMN04487898_11197 | Not Available | Negative | 4026145 - 4027653 | 58458.8 |
| lipopolysaccharide export system atp-binding protein | SAMN04487898_11198 | Not Available | Negative | 4027675 - 4028409 | 27470.4 |
| single-stranded-dna-specific exonuclease | SAMN04487898_11199 | Not Available | Negative | 4028419 - 4030125 | 63491.6 |
| metallo-beta-lactamase superfamily protein | SAMN04487898_111100 | Not Available | Positive | 4030268 - 4031032 | 28876.1 |
| chey chemotaxis protein or a chey-like rec (receiver) domain | SAMN04487898_111101 | Not Available | Negative | 4031040 - 4031435 | 14938.4 |
| glycine dehydrogenase | SAMN04487898_111102 | Not Available | Negative | 4031603 - 4034479 | 104978.0 |
| pyridoxine 5-phosphate synthase | SAMN04487898_111103 | Not Available | Negative | 4034563 - 4035282 | 26557.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

