Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein tolc | SAMN04487898_11124 | Not Available | Negative | 3915786 - 3917126 | 49747.6 |
| multidrug efflux pump | SAMN04487898_11125 | Not Available | Negative | 3917113 - 3920217 | 113496.0 |
| membrane fusion protein, multidrug efflux system | SAMN04487898_11126 | Not Available | Negative | 3920214 - 3921308 | 38692.0 |
| predicted metalloprotease, contains c-terminal pdz domain | SAMN04487898_11127 | Not Available | Positive | 3921583 - 3923370 | 66189.1 |
| hypothetical protein | SAMN04487898_11128 | Not Available | Positive | 3923831 - 3924205 | 13353.0 |
| hypothetical protein | SAMN04487898_11129 | Not Available | Negative | 3924295 - 3924771 | 16790.1 |
| n4-(beta-n-acetylglucosaminyl)-l-asparaginase | SAMN04487898_11130 | Not Available | Positive | 3924920 - 3925945 | 37038.6 |
| copper homeostasis protein | SAMN04487898_11131 | Not Available | Positive | 3925961 - 3926701 | 27189.4 |
| dna-binding response regulator, narl/fixj family, contains rec and hth domains | SAMN04487898_11132 | Not Available | Positive | 3926855 - 3927508 | 24745.9 |
| signal transduction histidine kinase | SAMN04487898_11133 | Not Available | Negative | 3927499 - 3930465 | 113520.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

