Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolases family 43 | SAMN04487898_110153 | Not Available | Negative | 3861183 - 3862280 | 40874.1 |
| glycosyl hydrolase family 67 n-terminus | SAMN04487898_110154 | Not Available | Negative | 3862309 - 3865161 | 107817.0 |
| alpha-n-arabinofuranosidase | SAMN04487898_110155 | Not Available | Positive | 3865387 - 3867063 | 63585.4 |
| endo-1,4-beta-xylanase | SAMN04487898_110156 | Not Available | Positive | 3867038 - 3868156 | 44117.9 |
| signal transduction histidine kinase | SAMN04487898_110157 | Not Available | Positive | 3868397 - 3872557 | 156387.0 |
| sialate o-acetylesterase | SAMN04487898_110158 | Not Available | Positive | 3872708 - 3874594 | 69904.7 |
| transketolase | SAMN04487898_110159 | Not Available | Positive | 3874708 - 3875553 | 30795.6 |
| transposase dde domain-containing protein | SAMN04487898_1111 | Not Available | Positive | 3875657 - 3875826 | 6314.88 |
| hypothetical protein | SAMN04487898_1112 | Not Available | Positive | 3876178 - 3876663 | 17552.2 |
| transmembrane secretion effector | SAMN04487898_1113 | Not Available | Negative | 3876671 - 3877771 | 39702.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

