Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane | SAMN04487898_11063 | Not Available | Positive | 3719615 - 3721363 | 65935.6 |
| major paralogous domain-containing protein | SAMN04487898_11064 | Not Available | Positive | 3721381 - 3722604 | 43245.7 |
| alpha-l-rhamnosidase | SAMN04487898_11065 | Not Available | Positive | 3722611 - 3724986 | 89860.5 |
| hypothetical protein | SAMN04487898_11066 | Not Available | Positive | 3725009 - 3725971 | 35942.3 |
| alpha-l-rhamnosidase n-terminal domain-containing protein | SAMN04487898_11067 | Not Available | Positive | 3725980 - 3728361 | 89921.7 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_11068 | Not Available | Positive | 3728524 - 3729114 | 23047.5 |
| two component transcriptional regulator, lyttr family | SAMN04487898_11069 | Not Available | Negative | 3729125 - 3729886 | 29439.7 |
| histidine kinase | SAMN04487898_11070 | Not Available | Negative | 3729873 - 3730928 | 41004.4 |
| hydrophobe/amphiphile efflux-1 (hae1) family protein | SAMN04487898_11071 | Not Available | Negative | 3731016 - 3735518 | 164448.0 |
| rnd family efflux transporter, mfp subunit | SAMN04487898_11072 | Not Available | Negative | 3735525 - 3736640 | 40395.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

