Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor, sigma-70 family | SAMN04487898_11053 | Not Available | Positive | 3703438 - 3704001 | 21675.4 |
| thiopurine s-methyltransferase (tpmt) | SAMN04487898_11054 | Not Available | Negative | 3704055 - 3705341 | 48483.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_11055 | Not Available | Positive | 3705755 - 3706360 | 23643.2 |
| fecr family protein | SAMN04487898_11056 | Not Available | Positive | 3706536 - 3707771 | 45746.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_11057 | Not Available | Positive | 3707971 - 3711480 | 128493.0 |
| starch-binding associating with outer membrane | SAMN04487898_11058 | Not Available | Positive | 3711495 - 3712916 | 52564.6 |
| thiol-disulfide isomerase or thioredoxin | SAMN04487898_11059 | Not Available | Positive | 3712927 - 3714096 | 44159.3 |
| ribosomal protein s18 acetylase rimi | SAMN04487898_11060 | Not Available | Positive | 3714163 - 3714675 | 19826.7 |
| fecr family protein | SAMN04487898_11061 | Not Available | Positive | 3714914 - 3716065 | 42649.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_11062 | Not Available | Positive | 3716196 - 3719597 | 126151.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

