Pedobacter sp. ok626

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. OK626 is a bacterial strain notable for its flagella presence, which suggests motility capabilities. This characteristic is significant as it may influence the bacterium's ability to navigate various environments, potentially aiding in nutrient acquisition or colonization of specific niches. The strain possesses a single replicon, indicating a streamlined genomic organization that could be advantageous for replication efficiency and resource allocation. This trait often reflects adaptation to specific ecological niches, where maintaining a compact genome may facilitate survival under selective pressures. The genomic data for Pedobacter sp. OK626 is documented under the accession number FNEX00000000.1, providing a reference for research and further study. This genetic information can be crucial for understanding the strain's metabolic pathways, ecological interactions, and potential applications in biotechnology or environmental microbiology. In summary, the presence of flagella and a singular replicon in Pedobacter sp. OK626 suggests adaptations that may enhance its survivability in dynamic environments. These traits could enable the bacterium to thrive in varied habitats, contributing to its ecological roles, such as in nutrient cycling or biodegradation processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. ok626
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. ok626 genome assembly, contig: Ga0066764_135, whole

Gene Summary

Adenine Count

2049762 bp

Thymine Count

2048164 bp

Guanine Count

1337759 bp

Cytosine Count

1326840 bp

Genome Length

6763971 bp

Protein-coding Genes

5456 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase sigma factor, sigma-70 familySAMN04487898_11053Not AvailablePositive3703438 - 370400121675.4
thiopurine s-methyltransferase (tpmt)SAMN04487898_11054Not AvailableNegative3704055 - 370534148483.6
rna polymerase sigma-70 factor, ecf subfamilySAMN04487898_11055Not AvailablePositive3705755 - 370636023643.2
fecr family proteinSAMN04487898_11056Not AvailablePositive3706536 - 370777145746.1
tonb-linked outer membrane protein, susc/raga familySAMN04487898_11057Not AvailablePositive3707971 - 3711480128493.0
starch-binding associating with outer membraneSAMN04487898_11058Not AvailablePositive3711495 - 371291652564.6
thiol-disulfide isomerase or thioredoxinSAMN04487898_11059Not AvailablePositive3712927 - 371409644159.3
ribosomal protein s18 acetylase rimiSAMN04487898_11060Not AvailablePositive3714163 - 371467519826.7
fecr family proteinSAMN04487898_11061Not AvailablePositive3714914 - 371606542649.3
tonb-linked outer membrane protein, susc/raga familySAMN04487898_11062Not AvailablePositive3716196 - 3719597126151.0

Displaying genes 3061 – 3070 of 5532 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.