Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-xylosidase | SAMN04487898_11043 | Not Available | Positive | 3683161 - 3684795 | 60994.4 |
| hypothetical protein | SAMN04487898_11044 | Not Available | Positive | 3684807 - 3686444 | 60365.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_11045 | Not Available | Positive | 3686574 - 3689786 | 118031.0 |
| starch-binding associating with outer membrane | SAMN04487898_11046 | Not Available | Positive | 3689773 - 3691551 | 66671.4 |
| ig-like domain (group 2) | SAMN04487898_11047 | Not Available | Positive | 3691570 - 3692991 | 49760.3 |
| alginate lyase | SAMN04487898_11048 | Not Available | Positive | 3693014 - 3694306 | 47079.8 |
| transcriptional regulator, laci family | SAMN04487898_11049 | Not Available | Positive | 3694406 - 3695422 | 38046.0 |
| glucokinase | SAMN04487898_11050 | Not Available | Positive | 3695499 - 3696389 | 32277.1 |
| heparinase ii/iii-like protein | SAMN04487898_11051 | Not Available | Positive | 3696391 - 3699135 | 104174.0 |
| signal transduction histidine kinase | SAMN04487898_11052 | Not Available | Positive | 3699210 - 3703307 | 154578.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

