Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific recombinase xerd | SAMN04487898_109200 | Not Available | Positive | 3592677 - 3593876 | 46575.1 |
| hypothetical protein | SAMN04487898_109201 | Not Available | Positive | 3593884 - 3594573 | 26489.6 |
| dna binding domain-containing protein, excisionase family | SAMN04487898_109202 | Not Available | Positive | 3594672 - 3595025 | 13560.7 |
| helix-turn-helix domain-containing protein | SAMN04487898_109203 | Not Available | Positive | 3595033 - 3595365 | 13385.0 |
| hypothetical protein | SAMN04487898_109204 | Not Available | Negative | 3595620 - 3595895 | 10884.9 |
| hypothetical protein | SAMN04487898_109205 | Not Available | Negative | 3595983 - 3596348 | 13877.5 |
| putative transcriptional regulator | SAMN04487898_109206 | Not Available | Positive | 3596536 - 3596781 | 9214.1 |
| hypothetical protein | SAMN04487898_109207 | Not Available | Negative | 3596804 - 3596935 | 4794.57 |
| protein of unknown function | SAMN04487898_109208 | Not Available | Negative | 3597406 - 3598266 | 33771.9 |
| aaa domain-containing protein, putative abieii toxin, type iv ta system | SAMN04487898_109209 | Not Available | Negative | 3598263 - 3599660 | 54305.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

