Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein, duf1800 family | SAMN04487898_109180 | Not Available | Negative | 3573197 - 3575212 | 74642.9 |
| catechol 2,3-dioxygenase | SAMN04487898_109181 | Not Available | Negative | 3575291 - 3575671 | 14185.9 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04487898_109182 | Not Available | Positive | 3575831 - 3576439 | 22371.0 |
| ghkl domain-containing protein | SAMN04487898_109183 | Not Available | Positive | 3576610 - 3577590 | 37572.9 |
| two component transcriptional regulator, lyttr family | SAMN04487898_109184 | Not Available | Positive | 3577587 - 3578342 | 28968.2 |
| hypothetical protein | SAMN04487898_109185 | Not Available | Negative | 3578339 - 3579253 | 33674.8 |
| catalase-peroxidase | SAMN04487898_109186 | Not Available | Positive | 3579506 - 3581779 | 83429.5 |
| hypothetical protein | SAMN04487898_109187 | Not Available | Negative | 3581941 - 3582090 | 5521.87 |
| hypothetical protein | SAMN04487898_109188 | Not Available | Positive | 3582231 - 3582962 | 28379.3 |
| hypothetical protein | SAMN04487898_109189 | Not Available | Negative | 3583008 - 3583613 | 22816.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

