Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific recombinase xerd | SAMN04487898_109170 | Not Available | Negative | 3557774 - 3559078 | 49566.8 |
| Trna-lys | Not Available | Not Available | Positive | 3559324 - 3559399 | Not Available |
| hypothetical protein | SAMN04487898_109172 | Not Available | Negative | 3559521 - 3559928 | 15014.4 |
| caax protease self-immunity | SAMN04487898_109173 | Not Available | Positive | 3560019 - 3560663 | 24553.8 |
| immunity protein 22 | SAMN04487898_109174 | Not Available | Positive | 3560737 - 3561171 | 16979.7 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN04487898_109175 | Not Available | Positive | 3561300 - 3562157 | 31600.2 |
| type ix secretion system membrane protein, porp/sprf family | SAMN04487898_109176 | Not Available | Negative | 3562168 - 3563139 | 35745.8 |
| gliding motility-associated c-terminal domain-containing protein | SAMN04487898_109177 | Not Available | Negative | 3563148 - 3570521 | 272126.0 |
| signal transduction histidine kinase | SAMN04487898_109178 | Not Available | Positive | 3570651 - 3572576 | 73479.5 |
| dna-binding response regulator, narl/fixj family, contains rec and hth domains | SAMN04487898_109179 | Not Available | Positive | 3572566 - 3573195 | 23317.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

