Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04487898_109140 | Not Available | Negative | 3523352 - 3526441 | 114665.0 |
| signal transduction histidine kinase | SAMN04487898_109141 | Not Available | Positive | 3526730 - 3530695 | 151807.0 |
| thioredoxin-like | SAMN04487898_109142 | Not Available | Positive | 3530685 - 3531545 | 33910.5 |
| glycosyl hydrolases family 28 | SAMN04487898_109143 | Not Available | Negative | 3531548 - 3533542 | 72870.2 |
| acetyltransferase (gnat) family protein | SAMN04487898_109144 | Not Available | Positive | 3533800 - 3534291 | 19271.2 |
| hypothetical protein | SAMN04487898_109145 | Not Available | Positive | 3534732 - 3535055 | 12013.3 |
| hypothetical protein | SAMN04487898_109146 | Not Available | Positive | 3535052 - 3535945 | 34469.1 |
| resolvase, n terminal domain | SAMN04487898_109147 | Not Available | Positive | 3536223 - 3536528 | 11845.4 |
| recombinase zinc beta ribbon domain-containing protein | SAMN04487898_109148 | Not Available | Positive | 3536534 - 3537274 | 28272.9 |
| undecaprenyl-diphosphatase | SAMN04487898_109149 | Not Available | Negative | 3537786 - 3538424 | 24396.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

