Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two component regulator propeller | SAMN04487898_10980 | Not Available | Positive | 3456254 - 3459448 | 121844.0 |
| helix-turn-helix domain-containing protein | SAMN04487898_10981 | Not Available | Positive | 3459445 - 3460218 | 29384.4 |
| beta-xylosidase, gh43 family | SAMN04487898_10982 | Not Available | Positive | 3460221 - 3461264 | 39243.2 |
| hypothetical protein | SAMN04487898_10983 | Not Available | Negative | 3461286 - 3462368 | 41038.2 |
| beta-xylosidase | SAMN04487898_10984 | Not Available | Negative | 3462473 - 3464104 | 61024.4 |
| ribosomal protein s18 acetylase rimi | SAMN04487898_10985 | Not Available | Positive | 3464325 - 3465170 | 31648.4 |
| phytanoyl-coa dioxygenase (phyh) | SAMN04487898_10986 | Not Available | Negative | 3465192 - 3466139 | 36498.9 |
| major facilitator superfamily protein | SAMN04487898_10987 | Not Available | Negative | 3466317 - 3467909 | 60144.9 |
| membrane fusion protein, multidrug efflux system | SAMN04487898_10988 | Not Available | Negative | 3467909 - 3468955 | 38915.7 |
| outer membrane protein tolc | SAMN04487898_10989 | Not Available | Negative | 3468966 - 3470300 | 51004.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

