Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04487898_10929 | Not Available | Positive | 3402801 - 3402971 | 6740.96 |
| response regulator receiver domain-containing protein | SAMN04487898_10930 | Not Available | Positive | 3402994 - 3403431 | 16507.3 |
| pas domain s-box-containing protein | SAMN04487898_10931 | Not Available | Negative | 3403428 - 3404909 | 55999.5 |
| two component transcriptional regulator, luxr family | SAMN04487898_10932 | Not Available | Positive | 3405114 - 3405761 | 24149.6 |
| dsba-like thioredoxin domain-containing protein | SAMN04487898_10933 | Not Available | Negative | 3405865 - 3406503 | 23973.1 |
| aldose 1-epimerase | SAMN04487898_10934 | Not Available | Negative | 3406503 - 3407540 | 38714.3 |
| galactokinase | SAMN04487898_10935 | Not Available | Positive | 3407627 - 3408778 | 42670.9 |
| spou rrna methylase family protein | SAMN04487898_10936 | Not Available | Positive | 3408794 - 3409324 | 19406.3 |
| glutamate synthase (nadph/nadh) small chain | SAMN04487898_10937 | Not Available | Negative | 3409415 - 3410881 | 53432.1 |
| glutamate synthase (nadph/nadh) large chain | SAMN04487898_10938 | Not Available | Negative | 3410946 - 3415454 | 165588.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

