Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04487898_1099 | Not Available | Negative | 3382042 - 3382863 | 28872.4 |
| 2-dehydro-3-deoxygluconokinase | SAMN04487898_10910 | Not Available | Positive | 3383038 - 3384033 | 36499.3 |
| 2-dehydro-3-deoxyphosphogluconate aldolase / (4s)-4-hydroxy-2-oxoglutarate aldolase | SAMN04487898_10911 | Not Available | Positive | 3384077 - 3384727 | 23845.0 |
| helix-turn-helix domain-containing protein | SAMN04487898_10912 | Not Available | Negative | 3384803 - 3385132 | 12533.2 |
| predicted dehydrogenase | SAMN04487898_10913 | Not Available | Negative | 3385676 - 3387031 | 50593.5 |
| transcriptional regulator, laci family | SAMN04487898_10914 | Not Available | Positive | 3387252 - 3388271 | 38080.2 |
| ser/thr protein kinase rdoa involved in cpx stress response, mazf antagonist | SAMN04487898_10915 | Not Available | Positive | 3388348 - 3389376 | 39460.8 |
| hypothetical protein | SAMN04487898_10916 | Not Available | Positive | 3389540 - 3389995 | 17141.3 |
| acyl-coa reductase | SAMN04487898_10917 | Not Available | Negative | 3390076 - 3391701 | 60299.0 |
| mfs transporter, acs family, hexuronate transporter | SAMN04487898_10918 | Not Available | Negative | 3391734 - 3393173 | 53343.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

