Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04487898_108232 | Not Available | Negative | 3370607 - 3371488 | 32767.0 |
| transketolase, c-terminal domain | SAMN04487898_108233 | Not Available | Negative | 3371592 - 3371978 | 13749.5 |
| hypothetical protein | SAMN04487898_1091 | Not Available | Negative | 3371979 - 3372252 | 9930.82 |
| disulphide bond corrector protein dsbc | SAMN04487898_1092 | Not Available | Negative | 3372259 - 3372705 | 16373.0 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN04487898_1093 | Not Available | Negative | 3373109 - 3374518 | 51354.9 |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN04487898_1094 | Not Available | Negative | 3374543 - 3377734 | 115236.0 |
| membrane fusion protein, multidrug efflux system | SAMN04487898_1095 | Not Available | Negative | 3377759 - 3378943 | 42392.0 |
| transcriptional regulator, tetr family | SAMN04487898_1096 | Not Available | Negative | 3379046 - 3379648 | 23604.8 |
| transcriptional regulator, laci family | SAMN04487898_1097 | Not Available | Positive | 3379814 - 3380848 | 38077.7 |
| mannonate dehydratase | SAMN04487898_1098 | Not Available | Negative | 3380845 - 3382020 | 44077.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

