Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| choline-sulfatase | SAMN04487898_101229 | Not Available | Positive | 313811 - 315205 | 51852.5 |
| hypothetical protein | SAMN04487898_101230 | Not Available | Positive | 315213 - 315350 | 5130.29 |
| signal transduction histidine kinase | SAMN04487898_101231 | Not Available | Positive | 315366 - 319433 | 153900.0 |
| glucokinase | SAMN04487898_101232 | Not Available | Positive | 319533 - 320450 | 31911.7 |
| fucose permease | SAMN04487898_101233 | Not Available | Positive | 320469 - 321722 | 45893.0 |
| lipocalin-like domain-containing protein | SAMN04487898_101234 | Not Available | Negative | 321774 - 322262 | 18455.9 |
| glycosyl hydrolase family 67 n-terminus | SAMN04487898_101235 | Not Available | Positive | 322465 - 325212 | 103561.0 |
| hypothetical protein | SAMN04487898_101236 | Not Available | Positive | 325212 - 326762 | 59366.2 |
| pectate lyase superfamily protein | SAMN04487898_101237 | Not Available | Positive | 326774 - 328378 | 59013.6 |
| alpha-l-fucosidase 2 | SAMN04487898_101238 | Not Available | Positive | 328397 - 331219 | 104131.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

