Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoglycerol transferase mdob | SAMN04487898_108132 | Not Available | Positive | 3242292 - 3244154 | 71277.2 |
| gtra-like protein | SAMN04487898_108133 | Not Available | Positive | 3244159 - 3244650 | 18910.5 |
| phenylalanine-4-hydroxylase | SAMN04487898_108134 | Not Available | Positive | 3244740 - 3246524 | 67228.5 |
| short-chain dehydrogenase | SAMN04487898_108135 | Not Available | Positive | 3246532 - 3247233 | 24880.3 |
| cell wall-associated hydrolase, nlpc family | SAMN04487898_108136 | Not Available | Positive | 3247284 - 3247832 | 20275.4 |
| nadh-fmn oxidoreductase rutf, flavin reductase (dim6/ntab) family | SAMN04487898_108137 | Not Available | Negative | 3247827 - 3248714 | 32528.2 |
| fumarylacetoacetate (faa) hydrolase | SAMN04487898_108138 | Not Available | Negative | 3248718 - 3249713 | 36645.8 |
| hypothetical protein | SAMN04487898_108139 | Not Available | Negative | 3249910 - 3250044 | 5019.2 |
| homogentisate 1,2-dioxygenase | SAMN04487898_108140 | Not Available | Positive | 3250130 - 3251296 | 44805.1 |
| 4-hydroxyphenylpyruvate dioxygenase | SAMN04487898_108141 | Not Available | Positive | 3251337 - 3252467 | 42551.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

