Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-terminal double-transmembrane domain-containing protein | SAMN04487898_10822 | Not Available | Negative | 3136335 - 3138383 | 76621.1 |
| l,d-transpeptidase catalytic domain | SAMN04487898_10823 | Not Available | Negative | 3138405 - 3139982 | 60973.7 |
| peptidase family m23 | SAMN04487898_10824 | Not Available | Negative | 3140047 - 3140985 | 34818.5 |
| hypothetical protein | SAMN04487898_10825 | Not Available | Negative | 3141293 - 3141484 | 6936.18 |
| atp phosphoribosyltransferase | SAMN04487898_10826 | Not Available | Positive | 3141488 - 3142339 | 30686.5 |
| histidinol dehydrogenase | SAMN04487898_10827 | Not Available | Positive | 3142397 - 3143686 | 46585.9 |
| histidinol-phosphate aminotransferase | SAMN04487898_10828 | Not Available | Positive | 3143688 - 3144731 | 38801.6 |
| imidazoleglycerol-phosphate dehydratase | SAMN04487898_10829 | Not Available | Positive | 3144750 - 3145883 | 42421.6 |
| glutamine amidotransferase | SAMN04487898_10830 | Not Available | Positive | 3145883 - 3146476 | 21734.3 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | SAMN04487898_10831 | Not Available | Positive | 3146478 - 3147227 | 27947.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

