Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. ok626 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
2049762 bp
Thymine Count
2048164 bp
Guanine Count
1337759 bp
Cytosine Count
1326840 bp
Genome Length
6763971 bp
Protein-coding Genes
5456 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxypepd_reg-like domain-containing protein | SAMN04487898_107203 | Not Available | Negative | 3090656 - 3091942 | 46134.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487898_107204 | Not Available | Negative | 3091935 - 3092513 | 22479.2 |
| ca-activated chloride channel family protein | SAMN04487898_107205 | Not Available | Positive | 3092611 - 3094488 | 68243.3 |
| protein of unknown function | SAMN04487898_107206 | Not Available | Positive | 3094485 - 3095276 | 28372.3 |
| superfamily ii dna and rna helicase | SAMN04487898_107207 | Not Available | Positive | 3095326 - 3096561 | 45856.9 |
| putative atpase | SAMN04487898_107208 | Not Available | Positive | 3096604 - 3097884 | 47151.0 |
| hypothetical protein | SAMN04487898_107209 | Not Available | Positive | 3097886 - 3099361 | 56111.4 |
| abc-2 type transport system atp-binding protein | SAMN04487898_107210 | Not Available | Positive | 3099371 - 3100069 | 26386.7 |
| outer membrane protein ompa | SAMN04487898_107211 | Not Available | Positive | 3100239 - 3100919 | 23139.8 |
| hypothetical protein | SAMN04487898_107212 | Not Available | Negative | 3101012 - 3101356 | 13367.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

